FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005441895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences305977850
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGTAT8733759428.543763543668277No Hit
GGTTCCTC8232487126.905500185716058ABI Solid3 Adapter A (100% over 8bp)
ATCATGCA6942729822.690301928718043No Hit
TAACAAGG6688808721.860434341897626No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)