FastQCFastQC Report
Wed 11 May 2022
EGAF00005441904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences295442138
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT9929589433.609252448613134No Hit
ACAAGGTA7038437023.823402604810557No Hit
TACTATAG6819676223.08295034068566No Hit
GTGGTACC5756511219.484394605890646No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)