FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005441922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences282759020
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCACT8819933231.192402633167987No Hit
GTCGATGC6806787524.072751065553984No Hit
ACTAGGAG6388331422.592847435954475No Hit
TGATTCTA6260849922.141998865323554No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)