FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005441928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences337319449
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCCGAC9820570429.113561133559184No Hit
CAGTACTG8640408025.61491199400127No Hit
GCAGTAGA7769882523.034196584377796No Hit
AGTAGTCT7501084022.23733028806175No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)