FastQCFastQC Report
Wed 11 May 2022
EGAF00005441946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences288691682
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC9538090933.03902223272232No Hit
TCAGCCGT7606597826.34851737778853No Hit
GGTCAATA6015610520.837491604624756No Hit
ATCTTTAG5708869019.7749687848644No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)