FastQCFastQC Report
Wed 11 May 2022
EGAF00005441964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences309463259
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGCCAA8553290727.63911531093906No Hit
TCAAGGCC8228352726.58911021162612No Hit
CTCCTAGT7983124425.796679146328No Hit
AGGTATTG6181558119.975095331106818No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)