FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005441970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences267790967
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATCACC7993245429.84882384027539No Hit
ACGGACAT7144897926.68087717835531No Hit
TTCAGGTG6158498822.99741051385053No Hit
GATCTTGA5482454620.47288846751877No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)