FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005441985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences255481778
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATCCG8023416331.40504329823476No Hit
CCTCATTC6781813226.545193371873278ABI Solid3 Adapter A (100% over 8bp)
TAATGGGA6010391023.525713054963944No Hit
GTGGCAAT4732557318.524050274928022No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)