FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005442015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences293168197
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCCGAT8366153128.53704182653891No Hit
GAAGGCTG7877673226.870831422413804No Hit
CCCTAACA6649345322.68099121269965No Hit
TGGATTGC6423648121.911135538347633No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)