FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005442021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences296706665
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCCGAT8444543028.460914418622853No Hit
GAAGGCTG8073529127.210474358572295No Hit
CCCTAACA6697083622.571395893651395No Hit
TGGATTGC6455510821.75721532915346No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)