FastQCFastQC Report
Wed 11 May 2022
EGAF00005442051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences299657160
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATACGCC11363713137.922381364089546No Hit
AGCCAATT9954172133.218535809389635No Hit
CTAGGTGA8477908328.292026461173165RNA PCR Primer, Index 38 (100% over 8bp)
TCGTTCAG16992250.5670563653476526No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)