FastQCFastQC Report
Thu 12 May 2022
EGAF00005442054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386345835
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATACGCC14742530938.15889693750678No Hit
AGCCAATT12561173732.51277110312319No Hit
CTAGGTGA11087133528.697432444172723RNA PCR Primer, Index 38 (100% over 8bp)
TCGTTCAG24374540.6308995151973102No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)