FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005442090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373655107
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA10959134329.329545066274175No Hit
GGGCTCTC10775426428.837894085039228No Hit
CATTAGCG8789592823.523277576934067No Hit
ACAAGAAT6841357218.309283271752523No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)