FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005442093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences311762715
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA9190485929.479105286852537No Hit
GGGCTCTC8921526928.616401098508526No Hit
CATTAGCG7227308323.182080320284612No Hit
ACAAGAAT5836950418.72241329435433No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)