FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005442102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences306507658
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCGTCA8735382128.499718920562827No Hit
GACTACGT8459916527.600995535321992No Hit
CTAGCGAG7290340023.785180597347424No Hit
TCTATATC6165127220.114104946767757No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)