FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005442117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences306652392
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCCA9189936629.968579537445773No Hit
CGCTATGT8371128227.29842785638535No Hit
AAACCGAG7350350423.969649648126666No Hit
TTGAGATC5753824018.763342958042212No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)