FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005442126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences288546775
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGCT11126262638.559649817607564No Hit
CGTTAATC6618650922.937878616040674No Hit
AAGGGTGA6293481721.810958379278368No Hit
TTACTCAG4816282316.691513187073394No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)