FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005442129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences289949823
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGCT11175173638.54175003238405No Hit
CGTTAATC6641729822.90647992566631No Hit
AAGGGTGA6342811221.875547756413013No Hit
TTACTCAG4835267716.676222285536628No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)