FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005442141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences312171935
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCGACG9425832630.194362603415968No Hit
CATGCGAT9395229530.09632976776083No Hit
TGATATTC6753905521.635210416977426No Hit
GTGATCGA5642225918.074097211845775No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)