FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005442162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences284770329
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGCAC8312012029.18847630365311No Hit
TTAGCTCG7613820426.73670542411039No Hit
GACCTATT6957109124.430596840726338No Hit
ACTTAGGA5594091419.64422143151016No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)