FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005442180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences336379770
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTCCCA10044514529.860637873674744No Hit
GTCCTAAC9023439126.825153902685646No Hit
ACAGAGGT8715368425.90931196605551No Hit
TATAGTTG5854655017.4048962575841No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)