FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005442189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences303198328
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT9289907230.63970458306749No Hit
AAACCTCA8465323227.920085364059133No Hit
CTGGACTC6421095521.17787239248892No Hit
TGTAGAAG6143506920.26233766038446No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)