FastQCFastQC Report
Wed 11 May 2022
EGAF00005442192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences303802501
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT9291839330.58513102892461No Hit
AAACCTCA8456422227.83526196184935No Hit
CTGGACTC6470433021.298155804188063No Hit
TGTAGAAG6161555620.281451205037975No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)