FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005442216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences352118466
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGCCTT11509630532.6868131363494No Hit
TCTCGGGC10426948329.61204624809424No Hit
AGGATACA7622052021.646271740829405No Hit
GTATATAG5653215816.054868874726953No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)