FastQCFastQC Report
Wed 11 May 2022
EGAF00005442255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences341049340
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAGC9316584427.317409264008546No Hit
AAAGTGCT8583640625.168324911580243No Hit
GCTACCTG8487470824.886342838253256No Hit
TGCTGTAA7717238222.627922986157955No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)