FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005442270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences289399891
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGCGT8053762527.829182907328736Illumina PCR Primer Index 6 (100% over 8bp)
CGCCATCG7763798626.827234015786132No Hit
TAGTTGTC6721141423.22440888548918No Hit
GCAACAAA6401286622.119174191395945No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)