FastQCFastQC Report
Wed 11 May 2022
EGAF00005442273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences300327197
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGCGT8335221727.753802463651Illumina PCR Primer Index 6 (100% over 8bp)
CGCCATCG8080827826.90674664406101No Hit
TAGTTGTC6961958723.181246219269312No Hit
GCAACAAA6654711522.158204673018673No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)