FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005442297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences344588309
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGTTG10072133129.22946843213999No Hit
CCGATAGC9262773926.880696930434745No Hit
TATGAGCT7716842022.39438134855585No Hit
ATACCCAA7407081921.495453288869413No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)