FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005442321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences339624270
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGAA11084643532.63796047320176No Hit
CGAACCTG8076381723.780343201032128No Hit
ATCTTACC7711404122.70569208731755No Hit
TATGGTGT7089997720.876004238448566No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)