FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005442366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences335968313
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGAAAG12323900736.681735220666475No Hit
GAAACCCT10987029432.7025763289766No Hit
TTTCTGTC10159646030.239893486621757No Hit
CCGTGTGA12625520.3757949637351663No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)