FastQCFastQC Report
Thu 2 May 2024
EGAF00005442420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences298985995
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCAGC10458703534.98057994321774No Hit
GTCAGCTA7399003324.746989570531554No Hit
CGATAGCT6492241621.7141996901895No Hit
AATGTTAG5548651118.5582307960612No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)