FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005442426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005442426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences332403374
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCAGC11680407235.13925583679545No Hit
GTCAGCTA8163033124.557612041567303No Hit
CGATAGCT7190674721.63237578930231No Hit
AATGTTAG6206222418.670756332334943No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)