EGAF00005445148 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005445148
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	35711801
Sequences flagged as poor quality	0
Sequence length	85
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	329067	0.921451707238176	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	301131	0.8432254648820428	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCTCGTAT	229874	0.643691982938637	TruSeq Adapter, Index 21 (97% over 40bp)
TTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	225929	0.6326452143928557	No Hit
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	206489	0.5782094271862682	No Hit
ATTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	46767	0.13095671092029215	No Hit
GCCTTATGTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGA	46015	0.12885096441929658	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATATCGTAT	40833	0.1143403548871702	TruSeq Adapter, Index 21 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TTTTGGG	51550	45.87949	2
GAGCACA	73890	42.55836	9
TTTGGGG	58535	42.023865	3
AGAGCAC	77355	40.733433	8
AAGAGCA	83925	37.634064	7
TTGGGGG	70390	37.4429	4
TCGTATG	34090	37.352337	44-45
TATGCCG	35800	36.73605	48-49
CGTTTCG	43475	34.574783	32-33
TTTTTGG	55885	34.51079	1
ACGTTTC	44115	34.467148	32-33
CTCGTAT	30335	34.247498	44-45
GTCACGT	45025	34.103706	28-29
CGTATGC	38970	33.89514	46-47
TTCGGAA	44060	33.194294	36-37
CGGAAGA	95845	32.826923	4
TTTCGGA	45390	32.699608	34-35
AGTCACG	48540	32.36647	28-29
GTATGCC	41075	32.297535	46-47
ATCGGAA	97865	32.061016	2