FastQCFastQC Report
Thu 12 May 2022
EGAF00005445161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005445161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49011381
Sequences flagged as poor quality0
Sequence length85
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT6184081.2617640788371176TruSeq Adapter, Index 19 (97% over 40bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5740881.1713361025268805No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5388871.0995140087972628No Hit
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3460390.7060380526718886No Hit
TTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3311600.6756797977188196No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATATCGTAT792540.16170529861217336TruSeq Adapter, Index 19 (97% over 40bp)
ATTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG555070.1132532870273539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)