EGAF00005445179 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005445179
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25903863
Sequences flagged as poor quality	0
Sequence length	85
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	675033	2.605916345372889	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	539018	2.080840220626553	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGC	371782	1.4352376709219006	TruSeq Adapter, Index 8 (100% over 50bp)
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	156046	0.602404359535101	No Hit
TTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	128911	0.49765164369499637	No Hit
CTTTGGTATAGTTGGGATTTTAATATCATTAATAGCATGATGGTGATTGT	32643	0.1260159536822751	No Hit
GTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGAGTAGGGA	30330	0.11708678354267084	No Hit
GCCTTATGTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGA	26504	0.10231678572419874	No Hit
GGAAGCTATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTG	26353	0.10173386108473473	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAGCACA	71050	46.15232	9
AGAGCAC	73270	44.78091	8
AGGGGGG	122435	43.994057	1
AAGAGCA	76330	43.130493	7
CGGAAGA	80845	40.355644	4
TCGGAAG	82830	39.322075	3
TCGTATG	42015	38.498455	42-43
TTTTGGG	30610	38.25997	2
TATGCCG	42770	37.804237	46-47
GATCGGA	85690	37.29879	1
ATCGGAA	88245	36.904884	2
CTCGTAT	42160	36.749897	42-43
GAAGAGC	90445	36.46526	6
CGTATGC	45035	35.98205	44-45
GTATGCC	46410	34.8777	44-45
GCCGTCT	47050	34.264126	48-49
TTGAATC	45920	33.507797	36-37
ATGCCGT	49225	32.963223	46-47
GGAAGAG	100350	32.893524	5
TTTGGGG	36125	32.757797	3