FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005445185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005445185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54834470
Sequences flagged as poor quality0
Sequence length85
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC1837890.33517055968627035TruSeq Adapter, Index 4 (100% over 50bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1769490.3226966541301484No Hit
GCCTTATGTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGA984090.17946558068309953No Hit
GCCTCACTTAGTTACAGTTTTATGGATAATTGGGATATTCTTTGGTATAG619380.11295449741740915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)