FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005445213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005445213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68341572
Sequences flagged as poor quality0
Sequence length85
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC2332020.3412300788164486TruSeq Adapter, Index 6 (100% over 50bp)
TTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1490390.21807956071013407No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1466230.2145443771764571No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1247650.18256091621655995No Hit
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG752460.11010282292014002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)