FastQCFastQC Report
Thu 12 May 2022
EGAF00005445215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005445215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47256795
Sequences flagged as poor quality0
Sequence length85
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1528800.32350903187573343No Hit
TTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1380030.2920278448845293No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1207180.25545109438759017No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC749510.1586036463116045TruSeq Adapter, Index 3 (100% over 50bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG564310.11941351502995495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)