FastQCFastQC Report
Thu 12 May 2022
EGAF00005445227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005445227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47210813
Sequences flagged as poor quality0
Sequence length85
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3309550.7010152525863089No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTAT2363510.5006289554894977TruSeq Adapter, Index 20 (97% over 44bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1154320.24450330901948247No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1028900.21793736108717296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)