FastQCFastQC Report
Thu 12 May 2022
EGAF00005445246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005445246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47955865
Sequences flagged as poor quality0
Sequence length85
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGC5925301.2355735841695275TruSeq Adapter, Index 8 (100% over 50bp)
GCCTTATGTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGA673490.14043954790514152No Hit
GGAAGCTATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTG527040.10990105172745815No Hit
CTTTGGTATAGTTGGGATTTTAATATCATTAATAGCATGATGGTGATTGT504590.10521966395559751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)