FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005445252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005445252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56350800
Sequences flagged as poor quality0
Sequence length85
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTAT7245541.2857918609851147TruSeq Adapter, Index 16 (97% over 40bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4506750.7997668178623907No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3421080.6071040695074427No Hit
TTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3364210.5970119323949261No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3222090.5717913499009775No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)