FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005446980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005446980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163036723
Sequences flagged as poor quality0
Sequence length31
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2889260.17721528909778198No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2691910.1651106542419894No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2175230.1334196345445437No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2098660.12872314662507048No Hit
TCCGAATTCAAAAAAAAAAAAAAAAAAAAAA1826610.11203672193533969No Hit
ATATGGGTGTAAAAAAAAAAAAAAAAAAAAA1767670.10842158548537559No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1674000.10267625410994062No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)