FastQCFastQC Report
Thu 16 May 2024
EGAF00005447039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005447039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114900758
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length46
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29782342.592005528805998No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA23187652.018058923510322No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8324560.7245000072149219No Hit
TAGAGCTGCAGGATCCCAGGGGAGGGGTCTCTCCTCCCACCCCAAG1242450.10813244591476062No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)