FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005466936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005466936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31929720
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATACGACGATCTCGTAT2238160.7009644932683406TruSeq Adapter, Index 27 (97% over 37bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT381450.11946550110680582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)