FastQCFastQC Report
Tue 14 May 2024
EGAF00005466984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005466984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77493965
Total Bases11.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA4236280.5466593430856197No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA2755860.35562253138034683No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1115120.14389765706271448No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)