FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005468054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005468054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3311658
Sequences flagged as poor quality0
Sequence length150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGAT7151.2601622E-511.0769234
ATCTCGG24900.010.1204829
GATCTCG18700.010.01069458
GGCGCGA8256.1002513E-59.5999993
CGCGATC7753.4487562E-49.2903225
GTGGCGC17102.910383E-119.2631581
TGGCGCG8901.3952388E-48.8988772
CGATCTC22751.8189894E-128.2285717
CACGATC9050.00161133657.95580155
GTCTCGC17804.6717105E-87.6853941
GCGATCT14357.4761574E-67.5261326
GCACGAT9950.00408137177.23618134
GTTCGAG14951.035368E-46.7424751
TCTCGCT20052.7199821E-66.463842
TCTGTCG14300.0031401356.04195838
TTCGAGA16804.6932013E-46.02
TGGCACG15850.00152563475.9053632
CTCGCTC17558.203574E-45.743593
GTGTTTC58500.05.53846171
TCGAGAC20600.00108230535.24271873
Produced by FastQC (version 0.11.5)