FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005469774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005469774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100699074
Sequences flagged as poor quality0
Sequence length85
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6197520.615449552197471No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5823270.5782843643626753No Hit
TTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5156470.5120672708469991No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2629740.2611483795769562No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATGTCGTATGC1609770.15985946405028512TruSeq Adapter, Index 5 (98% over 50bp)
GCCTTATGTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGA1608730.15975618604000272No Hit
CTTATGTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGAGT1271360.12625339533906738No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC1139640.11317283811368513TruSeq Adapter, Index 5 (100% over 50bp)
GGAAGCTATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTG1075890.10684209469493235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)