Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005472188 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20524848 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-151 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAGTAG | 6255 | 0.0 | 22.07148 | 3 |
GTCGAGA | 4510 | 0.0 | 21.477125 | 1 |
CCGAGTA | 7050 | 0.0 | 20.460844 | 2 |
AGTAGCT | 23345 | 0.0 | 19.74196 | 5 |
GACTTGT | 18550 | 0.0 | 19.550268 | 3 |
AAAGTGC | 36415 | 0.0 | 18.314644 | 4 |
TGATCAA | 20310 | 0.0 | 17.788685 | 9 |
GAGTAGC | 16250 | 0.0 | 17.710066 | 4 |
TAGCTGG | 27825 | 0.0 | 17.600435 | 7 |
CCAAAGT | 42320 | 0.0 | 17.54581 | 2 |
ACTTGTG | 21050 | 0.0 | 17.521921 | 4 |
GCTGGGA | 69720 | 0.0 | 17.2306 | 9 |
GTAGCTG | 27485 | 0.0 | 16.86881 | 6 |
GTGATCA | 21445 | 0.0 | 16.687054 | 8 |
CTACTCG | 5765 | 0.0 | 16.681002 | 2 |
AAGTGCT | 40830 | 0.0 | 16.637136 | 5 |
CGAGACT | 11195 | 0.0 | 16.445395 | 1 |
GAGACTT | 23295 | 0.0 | 16.130886 | 1 |
GCTACTC | 16400 | 0.0 | 15.79178 | 1 |
CAAAGTG | 45000 | 0.0 | 15.75179 | 3 |