FastQCFastQC Report
Sat 27 Aug 2022
EGAF00005472676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005472676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420444284
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGATG11001782826.167040958035713No Hit
TGTAAGGT10706337325.46434261905675No Hit
GCATCTCC10317799824.54023087634603No Hit
AACGTCAA10018508523.828385546561503No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)