FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005472682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005472682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166488371
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCTT4454096226.753197074647332No Hit
CAGATGGG4351530626.137144437553538No Hit
AGTGGAAC4088953024.559991640497223No Hit
TCACATCA3754257322.549666847301904Illumina PCR Primer Index 1 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)